PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088210.2
Common NameMTR_4g088210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 702aa    MW: 77756 Da    PI: 6.9416
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088210.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.92.5e-25148249199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  Medtr4g088210.2 148 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGE 238
                      99****************************963.3445679************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++++r+
  Medtr4g088210.2 239 DGELRLGIRRA 249
                      999*****996 PP

2Auxin_resp110.91.3e-36275355282
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      ++a+st+++F++ YnPr ++seF+++++k++k+l+ ++svGmRf+m+fe+ed++err++G+++ ++d+dpvrWp+SkW++L
  Medtr4g088210.2 275 VNALSTRCAFSIHYNPRIGSSEFIIPIHKFLKSLDYSYSVGMRFRMRFESEDAAERRFTGLIIRITDVDPVRWPGSKWKCL 355
                      6899****************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-43140255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41142251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-23146248No hitNo description
PROSITE profilePS5086313.747148250IPR003340B3 DNA binding domain
PfamPF023622.7E-23148249IPR003340B3 DNA binding domain
SMARTSM010197.8E-24148250IPR003340B3 DNA binding domain
PfamPF065071.8E-31275355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MMGLIDLNTT EEDETPSSGS SSSTSIGSVG AGSSVCLELW HACAGPMISL PKKGSVVVYF  60
PQGHLEHLHD FPLSFSDNIP SHVFCRVVDV KLHAEEGNDE VYCQVLLVPE SEQVQQKLRE  120
GVIDGDGDGD GEGEDTDAVM KSTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYS  180
QQRPSQELVA KDLHGQEWKF RHIYRGQPRR HLLTTGWSAF VNKKKLVSGD AVLFLRGEDG  240
ELRLGIRRAA QLKSCSNFSS ISGQQLNLGS LRDIVNALST RCAFSIHYNP RIGSSEFIIP  300
IHKFLKSLDY SYSVGMRFRM RFESEDAAER RFTGLIIRIT DVDPVRWPGS KWKCLVVRWD  360
DMEASRLNRV SPWEIEPSGS SSTTNSLMAT SLKRTKTGLP SSKLEFPVPS RIGTSDFGES  420
LRFQKVLQGQ EILGVDTTFN SINAHSHHQL SELRRCYPGS TYPGIASTGN NIRIPQMNSD  480
VSCNGFGESF RFQKVLQGQE ILPSQPYGQA FSVDEACRNG RFGLFDGHHQ VPRSTNGWSS  540
QTSNNSHFHP SVLMYQQASN MDYNSKINPV MEDNVLQRGS YYASEMKDGT FASTPTNKPI  600
FRGLAHEDTN SFGTHSRDLV TLQRSGQELV STCKNSCRVF GFSLTEGAPI ANKDAEPSAV  660
TCQINPGPPS FTRHIEDDFN PRHSLRSKAV ESYCTKGVLQ Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1133438418361Auxin response factor 1
4ldw_A1e-1133438418361Auxin response factor 1
4ldw_B1e-1133438418361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456934.10.0auxin response factor 3
SwissprotO236610.0ARFC_ARATH; Auxin response factor 3
TrEMBLA0A072UYN60.0A0A072UYN6_MEDTR; Auxin response factor
STRINGGLYMA07G32300.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]